=> Bootstrap dependency digest>=20010302: found digest-20111104 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 WARNING: [license.mk] Every package should define a LICENSE. ===> Building for py25-pytables-2.2.1nb1 (cd /tmp/pkgsrc/math/py-pytables/work/tables-2.2.1/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS=-lpthread\ -lrt PTHREADBASE=/usr DL_CFLAGS= DL_LDFLAGS= DL_LIBS= PYTHON=/usr/pkg/bin/python2.5 CC=gcc CFLAGS=-O3\ -pipe\ -fstack-protector\ -I/usr/include\ -I/usr/pkg/include CPPFLAGS=-I/usr/include\ -I/usr/pkg/include CXX=g++ CXXFLAGS=-O3\ -pipe\ -fstack-protector\ -I/usr/include\ -I/usr/pkg/include COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/tmp/pkgsrc/math/py-pytables/work/.wrapper/bin:/tmp/pkgsrc/math/py-pytables/work/.buildlink/bin:/tmp/pkgsrc/math/py-pytables/work/.gcc/bin:/tmp/pkgsrc/math/py-pytables/work/.tools/bin:/usr/pkg/bin:/bin:/usr/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/tmp/pkgsrc/math/py-pytables/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=share/man PKGINFODIR=share/info MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/pkgsrc/math/py-pytables/work/.tools/bin/makeinfo FLEX= PKG_CONFIG= PKG_CONFIG_LIBDIR=/tmp/pkgsrc/math/py-pytables/work/.buildlink/lib/pkgconfig:/tmp/pkgsrc/math/py-pytables/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/pkgsrc/math/py-pytables/work/.pkg-config.log PKG_CONFIG_PATH= WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg /usr/pkg/bin/python2.5 setup.py build --hdf5=/usr/pkg) * Found numpy 1.4.1 package installed. * Found HDF5 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. .. WARNING:: Could not find the HDF5 runtime. The HDF5 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Could not find LZO 2 headers and library; disabling support for it. * Could not find LZO 1 headers and library; disabling support for it. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. running build running build_py creating build creating build/lib.linux-x86_64-2.5 creating build/lib.linux-x86_64-2.5/tables copying tables/parameters.py -> build/lib.linux-x86_64-2.5/tables copying tables/description.py -> build/lib.linux-x86_64-2.5/tables copying tables/atom.py -> build/lib.linux-x86_64-2.5/tables copying tables/path.py -> build/lib.linux-x86_64-2.5/tables copying tables/utils.py -> build/lib.linux-x86_64-2.5/tables copying tables/exceptions.py -> build/lib.linux-x86_64-2.5/tables copying tables/group.py -> build/lib.linux-x86_64-2.5/tables copying tables/earray.py -> build/lib.linux-x86_64-2.5/tables copying tables/table.py -> build/lib.linux-x86_64-2.5/tables copying tables/_parameters_common.py -> build/lib.linux-x86_64-2.5/tables copying tables/_table_common.py -> build/lib.linux-x86_64-2.5/tables copying tables/vlarray.py -> build/lib.linux-x86_64-2.5/tables copying tables/attributeset.py -> build/lib.linux-x86_64-2.5/tables copying tables/flavor.py -> build/lib.linux-x86_64-2.5/tables copying tables/__init__.py -> build/lib.linux-x86_64-2.5/tables copying tables/node.py -> build/lib.linux-x86_64-2.5/tables copying tables/_conditions_common.py -> build/lib.linux-x86_64-2.5/tables copying tables/file.py -> build/lib.linux-x86_64-2.5/tables copying tables/unimplemented.py -> build/lib.linux-x86_64-2.5/tables copying tables/filters.py -> build/lib.linux-x86_64-2.5/tables copying tables/leaf.py -> build/lib.linux-x86_64-2.5/tables copying tables/undoredo.py -> build/lib.linux-x86_64-2.5/tables copying tables/req_versions.py -> build/lib.linux-x86_64-2.5/tables copying tables/link.py -> build/lib.linux-x86_64-2.5/tables copying tables/expression.py -> build/lib.linux-x86_64-2.5/tables copying tables/carray.py -> build/lib.linux-x86_64-2.5/tables copying tables/registry.py -> build/lib.linux-x86_64-2.5/tables copying tables/array.py -> build/lib.linux-x86_64-2.5/tables copying tables/conditions.py -> build/lib.linux-x86_64-2.5/tables creating build/lib.linux-x86_64-2.5/tables/nodes copying tables/nodes/__init__.py -> build/lib.linux-x86_64-2.5/tables/nodes copying tables/nodes/filenode.py -> build/lib.linux-x86_64-2.5/tables/nodes creating build/lib.linux-x86_64-2.5/tables/scripts copying tables/scripts/__init__.py -> build/lib.linux-x86_64-2.5/tables/scripts copying tables/scripts/ptrepack.py -> build/lib.linux-x86_64-2.5/tables/scripts copying tables/scripts/ptdump.py -> build/lib.linux-x86_64-2.5/tables/scripts creating build/lib.linux-x86_64-2.5/tables/nra copying tables/nra/__init__.py -> build/lib.linux-x86_64-2.5/tables/nra copying tables/nra/attributeaccess.py -> build/lib.linux-x86_64-2.5/tables/nra copying tables/nra/nestedrecords.py -> build/lib.linux-x86_64-2.5/tables/nra copying tables/nra/nriterators.py -> build/lib.linux-x86_64-2.5/tables/nra creating build/lib.linux-x86_64-2.5/tables/netcdf3 copying tables/netcdf3/__init__.py -> build/lib.linux-x86_64-2.5/tables/netcdf3 creating build/lib.linux-x86_64-2.5/tables/netcdf3/scripts copying tables/netcdf3/scripts/nctoh5.py -> build/lib.linux-x86_64-2.5/tables/netcdf3/scripts copying tables/netcdf3/scripts/__init__.py -> build/lib.linux-x86_64-2.5/tables/netcdf3/scripts creating build/lib.linux-x86_64-2.5/tables/misc copying tables/misc/proxydict.py -> build/lib.linux-x86_64-2.5/tables/misc copying tables/misc/__init__.py -> build/lib.linux-x86_64-2.5/tables/misc copying tables/misc/lrucache.py -> build/lib.linux-x86_64-2.5/tables/misc copying tables/misc/enum.py -> build/lib.linux-x86_64-2.5/tables/misc creating build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_attributes.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/common.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_links.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_backcompat.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_tables.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_numarray.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_do_undo.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_create.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_nestedtypes.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_queries.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_garbage.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/__init__.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_carray.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_basics.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_array.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_all.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_enum.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_earray.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_types.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_tree.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_timetype.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_index_backcompat.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_expression.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_hdf5compat.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_numpy.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_vlarray.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_tablesMD.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/check_leaks.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_Numeric.py -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_lists.py -> build/lib.linux-x86_64-2.5/tables/tests creating build/lib.linux-x86_64-2.5/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> build/lib.linux-x86_64-2.5/tables/nodes/tests copying tables/nodes/tests/__init__.py -> build/lib.linux-x86_64-2.5/tables/nodes/tests creating build/lib.linux-x86_64-2.5/tables/netcdf3/tests copying tables/netcdf3/tests/__init__.py -> build/lib.linux-x86_64-2.5/tables/netcdf3/tests copying tables/netcdf3/tests/test_netcdf3.py -> build/lib.linux-x86_64-2.5/tables/netcdf3/tests creating build/lib.linux-x86_64-2.5/tables/nra/tests copying tables/nra/tests/test_nestedrecords.py -> build/lib.linux-x86_64-2.5/tables/nra/tests copying tables/nra/tests/__init__.py -> build/lib.linux-x86_64-2.5/tables/nra/tests copying tables/nra/tests/test_nriterators.py -> build/lib.linux-x86_64-2.5/tables/nra/tests copying tables/tests/nested-type-with-gaps.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/elink.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/slink.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_enum.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/Tables_lzo2.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_f64le.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_f64be.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/ex-noattr.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_i32le.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/non-chunked-table.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_i64le.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/blosc_bigendian.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/test_szip.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/idx-std-1.x.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_unsupptype.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/elink2.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_i32be.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/Tables_lzo1.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/array_mdatom.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/indexes_2_0.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/zerodim-attrs-1.4.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/times-nested-be.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/attr-u16.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/smpl_i64be.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/tests/vlunicode_endian.h5 -> build/lib.linux-x86_64-2.5/tables/tests copying tables/nodes/tests/test_filenode.dat -> build/lib.linux-x86_64-2.5/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> build/lib.linux-x86_64-2.5/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> build/lib.linux-x86_64-2.5/tables/nodes/tests running build_ext building 'tables.utilsExtension' extension C compiler: gcc -DNDEBUG -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include/db4 -I/usr/pkg/include -I/usr/pkg/include/ncurses -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -fPIC creating build/temp.linux-x86_64-2.5 creating build/temp.linux-x86_64-2.5/tables creating build/temp.linux-x86_64-2.5/src creating build/temp.linux-x86_64-2.5/blosc compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/pkg/lib/python2.5/site-packages/numpy/core/include -I/usr/pkg/include -I/usr/pkg/include/python2.5 -c' extra options: '-O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -Isrc -DH5_USE_16_API' gcc: src/H5ATTR.c gcc: src/utils.c gcc: src/H5ARRAY.c In file included from /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/Python.h:8:0, from src/utils.h:1, from src/H5ARRAY.c:4: /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/pyconfig.h:939:0: warning: "_POSIX_C_SOURCE" redefined /usr/include/features.h:214:0: note: this is the location of the previous definition gcc: blosc/shuffle.c gcc: blosc/blosc_filter.c gcc: blosc/blosclz.c gcc: blosc/blosc.c gcc: tables/utilsExtension.c gcc -pthread -shared -L/tmp/pkgsrc/lang/python25/work/Python-2.5.6 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include build/temp.linux-x86_64-2.5/tables/utilsExtension.o build/temp.linux-x86_64-2.5/src/utils.o build/temp.linux-x86_64-2.5/src/H5ARRAY.o build/temp.linux-x86_64-2.5/src/H5ATTR.o build/temp.linux-x86_64-2.5/blosc/blosc.o build/temp.linux-x86_64-2.5/blosc/blosclz.o build/temp.linux-x86_64-2.5/blosc/shuffle.o build/temp.linux-x86_64-2.5/blosc/blosc_filter.o -L/usr/pkg/lib -L/usr/pkg/lib -lhdf5 -lpython2.5 -o build/lib.linux-x86_64-2.5/tables/utilsExtension.so -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib building 'tables.hdf5Extension' extension C compiler: gcc -DNDEBUG -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include/db4 -I/usr/pkg/include -I/usr/pkg/include/ncurses -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -fPIC compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/pkg/lib/python2.5/site-packages/numpy/core/include -I/usr/pkg/include -I/usr/pkg/include/python2.5 -c' extra options: '-O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -Isrc -DH5_USE_16_API' gcc: tables/hdf5Extension.c gcc: src/typeconv.c gcc: src/H5ARRAY-opt.c gcc: src/H5VLARRAY.c In file included from /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/Python.h:8:0, from src/utils.h:1, from src/H5VLARRAY.c:3: /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/pyconfig.h:939:0: warning: "_POSIX_C_SOURCE" redefined /usr/include/features.h:214:0: note: this is the location of the previous definition gcc -pthread -shared -L/tmp/pkgsrc/lang/python25/work/Python-2.5.6 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include build/temp.linux-x86_64-2.5/tables/hdf5Extension.o build/temp.linux-x86_64-2.5/src/utils.o build/temp.linux-x86_64-2.5/src/typeconv.o build/temp.linux-x86_64-2.5/src/H5ARRAY.o build/temp.linux-x86_64-2.5/src/H5ARRAY-opt.o build/temp.linux-x86_64-2.5/src/H5VLARRAY.o build/temp.linux-x86_64-2.5/src/H5ATTR.o build/temp.linux-x86_64-2.5/blosc/blosc.o build/temp.linux-x86_64-2.5/blosc/blosclz.o build/temp.linux-x86_64-2.5/blosc/shuffle.o build/temp.linux-x86_64-2.5/blosc/blosc_filter.o -L/usr/pkg/lib -L/usr/pkg/lib -lhdf5 -lpython2.5 -o build/lib.linux-x86_64-2.5/tables/hdf5Extension.so -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib building 'tables.tableExtension' extension C compiler: gcc -DNDEBUG -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include/db4 -I/usr/pkg/include -I/usr/pkg/include/ncurses -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -fPIC compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/pkg/lib/python2.5/site-packages/numpy/core/include -I/usr/pkg/include -I/usr/pkg/include/python2.5 -c' extra options: '-O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -Isrc -DH5_USE_16_API' gcc: src/H5TB-opt.c In file included from /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/Python.h:8:0, from src/utils.h:1, from src/H5TB-opt.c:36: /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/python2.5/pyconfig.h:939:0: warning: "_POSIX_C_SOURCE" redefined /usr/include/features.h:214:0: note: this is the location of the previous definition src/H5TB-opt.c: In function 'H5TBOread_elements': src/H5TB-opt.c:308:2: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/H5Spublic.h:128:15: note: expected 'const hsize_t *' but argument is of type 'const hsize_t **' src/H5TB-opt.c: In function 'H5TBOwrite_elements': src/H5TB-opt.c:517:2: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type /tmp/pkgsrc/math/py-pytables/work/.buildlink/include/H5Spublic.h:128:15: note: expected 'const hsize_t *' but argument is of type 'const hsize_t **' gcc: tables/tableExtension.c gcc -pthread -shared -L/tmp/pkgsrc/lang/python25/work/Python-2.5.6 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include build/temp.linux-x86_64-2.5/tables/tableExtension.o build/temp.linux-x86_64-2.5/src/utils.o build/temp.linux-x86_64-2.5/src/typeconv.o build/temp.linux-x86_64-2.5/src/H5TB-opt.o build/temp.linux-x86_64-2.5/src/H5ATTR.o build/temp.linux-x86_64-2.5/blosc/blosc.o build/temp.linux-x86_64-2.5/blosc/blosclz.o build/temp.linux-x86_64-2.5/blosc/shuffle.o build/temp.linux-x86_64-2.5/blosc/blosc_filter.o -L/usr/pkg/lib -L/usr/pkg/lib -lhdf5 -lpython2.5 -o build/lib.linux-x86_64-2.5/tables/tableExtension.so -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib building 'tables._comp_lzo' extension C compiler: gcc -DNDEBUG -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include/db4 -I/usr/pkg/include -I/usr/pkg/include/ncurses -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -fPIC compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/pkg/lib/python2.5/site-packages/numpy/core/include -I/usr/pkg/include -I/usr/pkg/include/python2.5 -c' extra options: '-O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -Isrc -DH5_USE_16_API' gcc: tables/_comp_lzo.c gcc: src/H5Zlzo.c gcc -pthread -shared -L/tmp/pkgsrc/lang/python25/work/Python-2.5.6 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include build/temp.linux-x86_64-2.5/tables/_comp_lzo.o build/temp.linux-x86_64-2.5/src/H5Zlzo.o -L/usr/pkg/lib -L/usr/pkg/lib -lpython2.5 -o build/lib.linux-x86_64-2.5/tables/_comp_lzo.so -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib building 'tables._comp_bzip2' extension C compiler: gcc -DNDEBUG -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include/db4 -I/usr/pkg/include -I/usr/pkg/include/ncurses -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include -fPIC compile options: '-DNDEBUG=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/usr/pkg/lib/python2.5/site-packages/numpy/core/include -I/usr/pkg/include -I/usr/pkg/include/python2.5 -c' extra options: '-O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -Isrc -DH5_USE_16_API' gcc: src/H5Zbzip2.c gcc: tables/_comp_bzip2.c gcc -pthread -shared -L/tmp/pkgsrc/lang/python25/work/Python-2.5.6 -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O3 -pipe -fstack-protector -I/usr/include -I/usr/pkg/include -I/usr/include -I/usr/pkg/include build/temp.linux-x86_64-2.5/tables/_comp_bzip2.o build/temp.linux-x86_64-2.5/src/H5Zbzip2.o -L/usr/pkg/lib -L/usr/pkg/lib -lhdf5 -lbz2 -lpython2.5 -o build/lib.linux-x86_64-2.5/tables/_comp_bzip2.so -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib cythoning tables/linkExtension.pyx to tables/linkExtension.c *** glibc detected *** /usr/pkg/bin/python2.5: malloc(): corrupted unsorted chunks 2: 0x00000000022cde40 *** ======= Backtrace: ========= /lib/libc.so.6(+0x71f66)[0x7fa74c6f9f66] /lib/libc.so.6(+0x74c15)[0x7fa74c6fcc15] /lib/libc.so.6(__libc_malloc+0x70)[0x7fa74c6fe830] /usr/pkg/lib/libpython2.5.so.1.0(PyList_Append+0xaf)[0x7fa74d32221f] /usr/pkg/lib/python2.5/site-packages/Cython/Plex/Scanners.so(+0x5759)[0x7fa74817e759] /usr/pkg/lib/python2.5/site-packages/Cython/Plex/Scanners.so(+0x8b44)[0x7fa748181b44] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Scanning.so(+0x12880)[0x7fa7485aa880] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x8beb3)[0x7fa747f3beb3] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x9d8d2)[0x7fa747f4d8d2] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x9ff07)[0x7fa747f4ff07] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_CallObjectWithKeywords+0x73)[0x7fa74d37a263] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x1516e)[0x7fa747ec516e] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x816ff)[0x7fa747f316ff] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x89933)[0x7fa747f39933] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x9e4a6)[0x7fa747f4e4a6] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x9ff07)[0x7fa747f4ff07] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_CallObjectWithKeywords+0x73)[0x7fa74d37a263] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x1516e)[0x7fa747ec516e] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x34ee7)[0x7fa747ee4ee7] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_CallObjectWithKeywords+0x73)[0x7fa74d37a263] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x6160f)[0x7fa747f1160f] /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so(+0x62580)[0x7fa747f12580] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4d44)[0x7fa74d37f5e4] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(+0x61412)[0x7fa74d319412] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(+0x4beef)[0x7fa74d303eef] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(+0x941e0)[0x7fa74d34c1e0] /usr/pkg/lib/libpython2.5.so.1.0(+0x8f878)[0x7fa74d347878] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4131)[0x7fa74d37e9d1] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCode+0x32)[0x7fa74d380cb2] /usr/pkg/lib/libpython2.5.so.1.0(PyImport_ExecCodeModuleEx+0xc2)[0x7fa74d397bc2] /usr/pkg/lib/libpython2.5.so.1.0(+0xdfee0)[0x7fa74d397ee0] /usr/pkg/lib/libpython2.5.so.1.0(+0xe106f)[0x7fa74d39906f] /usr/pkg/lib/libpython2.5.so.1.0(+0xe1304)[0x7fa74d399304] /usr/pkg/lib/libpython2.5.so.1.0(+0xe1944)[0x7fa74d399944] /usr/pkg/lib/libpython2.5.so.1.0(PyImport_ImportModuleLevel+0xa9)[0x7fa74d399f29] /usr/pkg/lib/libpython2.5.so.1.0(+0xc099f)[0x7fa74d37899f] /usr/pkg/lib/libpython2.5.so.1.0(PyObject_Call+0x13)[0x7fa74d2f9753] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_CallObjectWithKeywords+0x73)[0x7fa74d37a263] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x1238)[0x7fa74d37bad8] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalCodeEx+0x82c)[0x7fa74d380b8c] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x4b9d)[0x7fa74d37f43d] /usr/pkg/lib/libpython2.5.so.1.0(PyEval_EvalFrameEx+0x56a7)[0x7fa74d37ff47] ======= Memory map: ======== 00400000-00401000 r-xp 00000000 fe:08 133879 /usr/pkg/bin/python2.5 00600000-00601000 rw-p 00000000 fe:08 133879 /usr/pkg/bin/python2.5 0192a000-025e3000 rw-p 00000000 00:00 0 [heap] 7fa740000000-7fa740021000 rw-p 00000000 00:00 0 7fa740021000-7fa744000000 ---p 00000000 00:00 0 7fa747871000-7fa747887000 r-xp 00000000 fe:08 99036 /usr/lib/libgcc_s.so.1 7fa747887000-7fa747a87000 ---p 00016000 fe:08 99036 /usr/lib/libgcc_s.so.1 7fa747a87000-7fa747a88000 rw-p 00016000 fe:08 99036 /usr/lib/libgcc_s.so.1 7fa747a88000-7fa747aa9000 r-xp 00000000 fe:08 197541 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Visitor.so 7fa747aa9000-7fa747ca8000 ---p 00021000 fe:08 197541 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Visitor.so 7fa747ca8000-7fa747cac000 rw-p 00020000 fe:08 197541 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Visitor.so 7fa747cac000-7fa747cad000 rw-p 00000000 00:00 0 7fa747cad000-7fa747caf000 r-xp 00000000 fe:08 189310 /usr/pkg/lib/python2.5/lib-dynload/_bisect.so 7fa747caf000-7fa747eaf000 ---p 00002000 fe:08 189310 /usr/pkg/lib/python2.5/lib-dynload/_bisect.so 7fa747eaf000-7fa747eb0000 rw-p 00002000 fe:08 189310 /usr/pkg/lib/python2.5/lib-dynload/_bisect.so 7fa747eb0000-7fa747f6c000 r-xp 00000000 fe:08 197485 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so 7fa747f6c000-7fa74816c000 ---p 000bc000 fe:08 197485 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so 7fa74816c000-7fa748178000 rw-p 000bc000 fe:08 197485 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Parsing.so 7fa748178000-7fa748179000 rw-p 00000000 00:00 0 7fa748179000-7fa74818a000 r-xp 00000000 fe:08 197682 /usr/pkg/lib/python2.5/site-packages/Cython/Plex/Scanners.so 7fa74818a000-7fa74838a000 ---p 00011000 fe:08 197682 /usr/pkg/lib/python2.5/site-packages/Cython/Plex/Scanners.so 7fa74838a000-7fa74838d000 rw-p 00011000 fe:08 197682 /usr/pkg/lib/python2.5/site-packages/Cython/Plex/Scanners.so 7fa74838d000-7fa748396000 r-xp 00000000 fe:08 189333 /usr/pkg/lib/python2.5/lib-dynload/array.so 7fa748396000-7fa748595000 ---p 00009000 fe:08 189333 /usr/pkg/lib/python2.5/lib-dynload/array.so 7fa748595000-7fa748598000 rw-p 00008000 fe:08 189333 /usr/pkg/lib/python2.5/lib-dynload/array.so 7fa748598000-7fa7485b8000 r-xp 00000000 fe:08 197493 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Scanning.so 7fa7485b8000-7fa7487b7000 ---p 00020000 fe:08 197493 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Scanning.so 7fa7487b7000-7fa7487bd000 rw-p 0001f000 fe:08 197493 /usr/pkg/lib/python2.5/site-packages/Cython/Compiler/Scanning.so 7fa7487bd000-7fa7487c3000 r-xp 00000000 fe:08 189341 /usr/pkg/lib/python2.5/lib-dynload/collections.so 7fa7487c3000-7fa7489c2000 ---p 00006000 fe:08 189341 /usr/pkg/lib/python2.5/lib-dynload/collections.so 7fa7489c2000-7fa7489c4000 rw-p 00005000 fe:08 189341 /usr/pkg/lib/python2.5/lib-dynload/collections.so 7fa7489c4000-7fa7489c7000 r-xp 00000000 fe:08 189355 /usr/pkg/lib/python2.5/lib-dynload/select.so 7fa7489c7000-7fa748bc7000 ---p 00003000 fe:08 189355 /usr/pkg/lib/python2.5/lib-dynload/select.so 7fa748bc7000-7fa748bc8000 rw-p 00003000 fe:08 189355 /usr/pkg/lib/python2.5/lib-dynload/select.so 7fa748bc8000-7fa748bcb000 r-xp 00000000 fe:08 189345 /usr/pkg/lib/python2.5/lib-dynload/fcntl.so 7fa748bcb000-7fa748dca000 ---p 00003000 fe:08 189345 /usr/pkg/lib/python2.5/lib-dynload/fcntl.so 7fa748dca000-7fa748dcc000 rw-p 00002000 fe:08 189345 /usr/pkg/lib/python2.5/lib-dynload/fcntl.so 7fa748dcc000-7fa748dcf000 r-xp 00000000 fe:08 189327 /usr/pkg/lib/python2.5/lib-dynload/_random.so 7fa748dcf000-7fa748fce000 ---p 00003000 fe:08 189327 /usr/pkg/lib/python2.5/lib-dynload/_random.so 7fa748fce000-7fa748fcf000 rw-p 00002000 fe:08 189327 /usr/pkg/lib/python2.5/lib-dynload/_random.so 7fa748fcf000-7fa748fd4000 r-xp 00000000 fe:08 189335 /usr/pkg/lib/python2.5/lib-dynload/binascii.so 7fa748fd4000-7fa7491d3000 ---p 00005000 fe:08 189335 /usr/pkg/lib/python2.5/lib-dynload/binascii.so 7fa7491d3000-7fa7491d4000 rw-p 00004000 fe:08 189335 /usr/pkg/lib/python2.5/lib-dynload/binascii.so 7fa7491d4000-7fa7491da000 r-xp 00000000 fe:08 189330 /usr/pkg/lib/python2.5/lib-dynload/_struct.so 7fa7491da000-7fa7493da000 ---p 00006000 fe:08 189330 /usr/pkg/lib/python2.5/lib-dynload/_struct.so 7fa7493da000-7fa7493dc000 rw-p 00006000 fe:08 189330 /usr/pkg/lib/python2.5/lib-dynload/_struct.so 7fa7493dc000-7fa7493e4000 r-xp 00000000 fe:08 133815 /usr/pkg/lib/libffi.so.5.0.10 7fa7493e4000-7fa7495e3000 ---p 00008000 fe:08 133815 /usr/pkg/lib/libffi.so.5.0.10 7fa7495e3000-7fa7495e4000 rw-p 00007000 fe:08 133815 /usr/pkg/lib/libffi.so.5.0.10 7fa7495e4000-7fa7495fb000 r-xp 00000000 fe:08 189318 /usr/pkg/lib/python2.5/lib-dynload/_ctypes.so 7fa7495fb000-7fa7497fb000 ---p 00017000 fe:08 189318 /usr/pkg/lib/python2.5/lib-dynload/_ctypes.so 7fa7497fb000-7fa7497ff000 rw-p 00017000 fe:08 189318 /usr/pkg/lib/python2.5/lib-dynload/_ctypes.so 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7fa74d7d4000-7fa74d85b000 rw-p 00000000 00:00 0 7fa74d85c000-7fa74d85e000 rw-p 00000000 00:00 0 7fa74d85e000-7fa74d85f000 r--p 0001f000 fe:08 589839 /lib/ld-2.13.so 7fa74d85f000-7fa74d860000 rw-p 00020000 fe:08 589839 /lib/ld-2.13.so 7fa74d860000-7fa74d861000 rw-p 00000000 00:00 0 7fffb2a9c000-7fffb2ac7000 rw-p 00000000 00:00 0 [stack] 7fffb2bff000-7fffb2c00000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] /bin/sh: line 1: 17351 Aborted /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS=-lpthread\ -lrt PTHREADBASE=/usr DL_CFLAGS= DL_LDFLAGS= DL_LIBS= PYTHON=/usr/pkg/bin/python2.5 CC=gcc CFLAGS=-O3\ -pipe\ -fstack-protector\ -I/usr/include\ -I/usr/pkg/include CPPFLAGS=-I/usr/include\ -I/usr/pkg/include CXX=g++ CXXFLAGS=-O3\ -pipe\ -fstack-protector\ -I/usr/include\ -I/usr/pkg/include COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/tmp/pkgsrc/math/py-pytables/work/.wrapper/bin:/tmp/pkgsrc/math/py-pytables/work/.buildlink/bin:/tmp/pkgsrc/math/py-pytables/work/.gcc/bin:/tmp/pkgsrc/math/py-pytables/work/.tools/bin:/usr/pkg/bin:/bin:/usr/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/tmp/pkgsrc/math/py-pytables/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=share/man PKGINFODIR=share/info MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ pbulk\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ pbulk\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ pbulk\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/pkgsrc/math/py-pytables/work/.tools/bin/makeinfo FLEX= PKG_CONFIG= PKG_CONFIG_LIBDIR=/tmp/pkgsrc/math/py-pytables/work/.buildlink/lib/pkgconfig:/tmp/pkgsrc/math/py-pytables/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/pkgsrc/math/py-pytables/work/.pkg-config.log PKG_CONFIG_PATH= WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg /usr/pkg/bin/python2.5 setup.py build --hdf5=/usr/pkg *** Error code 134 Stop. bmake: stopped in /usr/pkgsrc/math/py-pytables *** Error code 1 Stop. bmake: stopped in /usr/pkgsrc/math/py-pytables