Package PyML :: Package containers :: Module sequenceData :: Class SequenceData
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Class SequenceData

source code

                   object --+        
                            |        
     baseDatasets.BaseDataSet --+    
                                |    
      baseDatasets.WrapperDataSet --+
                                    |
ext.csequencedata._object --+       |
                            |       |
    ext.csequencedata.DataSet --+   |
                                |   |
   ext.csequencedata.SequenceData --+
                                    |
                                   SequenceData

Instance Methods
 
__init__(self, arg=None, **args)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
source code
 
copy(self, other, patterns, deepcopy)
Each class that wants to use the generic copy constructor needs to define this function for doing class-specific copying
source code
 
constructFromFile(self, fileName, **args) source code
 
fromArray(self, X, **args) source code
 
__len__(self)
the number of patterns in the dataset
source code
 
save(self, fileName) source code
 
attachStringKernel(self, stringKernel=None, **args) source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

    Inherited from baseDatasets.WrapperDataSet
 
attachKernel(data, kernel='linear', **args) source code
 
attachLabels(self, labels) source code
 
getX(self) source code
 
get_kernel(self) source code
 
setX(self, value) source code
 
set_kernel(self, value) source code
    Inherited from baseDatasets.BaseDataSet
 
copyConstruct(self, other, **args) source code
 
getKernelMatrix(self)
returns the kernel matrix as a numpy array
source code
 
getTestingFunc(self) source code
 
getTrainingFunc(self) source code
 
registerAttribute(self, attributeName, attributeValue=None, action=None) source code
 
setTestingFunc(self, func) source code
 
setTrainingFunc(self, func) source code
 
test(self, trainingData, **args) source code
 
train(self, **args) source code
    Inherited from ext.csequencedata.SequenceData
 
addPattern(*args) source code
 
castToBase(*args) source code
 
dotProduct(*args) source code
 
duplicate(*args) source code
 
getSequence(*args) source code
 
positionalKmerKernel(*args) source code
 
setMismatchProfile(*args) source code
 
show(*args) source code
 
size(*args) source code
    Inherited from ext.csequencedata.DataSet
 
computeNorms(*args) source code
 
getKernelMatrixAsVector(*args) source code
 
setKernel(*args) source code
 
setY(*args) source code
Class Variables
    Inherited from baseDatasets.WrapperDataSet
  X = property(getX, setX, None, 'X')
  isWrapper = True
  kernel = property(get_kernel, set_kernel, None, 'kernel')
    Inherited from baseDatasets.BaseDataSet
  isVector = False
  testingFunc = property(getTestingFunc, setTestingFunc, None, '...
  trainingFunc = property(getTrainingFunc, setTrainingFunc, None...
  type = 'dataset'
    Inherited from ext.csequencedata.SequenceData
  __del__ = lambda self:
  __getattr__ = lambda self, name:
  __swig_destroy__ = _csequencedata.delete_SequenceData
  __swig_getmethods__ = {}
  __swig_setmethods__ = {}
Properties

Inherited from object: __class__

Method Details

__init__(self, arg=None, **args)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: ext.csequencedata.DataSet.__init__

copy(self, other, patterns, deepcopy)

source code 

Each class that wants to use the generic copy constructor needs to define this function for doing class-specific copying

Overrides: baseDatasets.BaseDataSet.copy
(inherited documentation)

__len__(self)
(Length operator)

source code 

the number of patterns in the dataset

Overrides: baseDatasets.WrapperDataSet.__len__
(inherited documentation)